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I
-interpret is an efficient "interpreter" of chemical structures, which can automatically interpret the chemical structure of a given organic molecule merely from its essential structural information, including element identities and three-dimensional coordinates of its component atoms. I-interpret was tested on thousands of small organic molecules and achieved a high success rate in interpreting their correct chemical structures. It can serve as a valuable tool for processing chemical structures in various molecular modeling studies, especially for high-throughput projects such as processing large databases of organic molecules.
[user manual]
input file name:
input file format:
PDB
SDF
MOL
RDF
MOL2
output file name:
output file format:
MOL2
PDB
SDF
MOL
Parameters
Protonation state
Neutral form
Charged form
add hydrogens
Yes
No
output largest substructure
Yes
No
I-interpret version: v1.1. Latest update on 2007/12/05.
Reference:
Yuan Zhao, Tiejun Cheng, and Renxiao Wang*
Automatic Perception of Organic Molecules Based on Essential Structural Information
J. Chem. Inf. Model.
2007,
47,
1379-1385
DOWNLOAD
For academic/governmental users, you may download and use I-interpret for free under a license agreement. Please follow the instructions below to
register with us and download I-interpret
. Note that you may use your username to log on
our discussion forum
to post questions and comments on I-interpret.
For industrial/commercial users, a moderate license fee may apply. Please contact us directly at
wangrx@mail.sioc.ac.cn
.